Tag: E coli

a new antibiotic

tuberculosis

Tuberculosis bacteria

Much ink has been spilled over the lack of new antibiotics and the increase in drug resistant bacteria. But a few weeks ago, there was finally news of a breakthrough. Researchers have finally discovered a new antibiotic, teixobactin.

Teixobactin works by binding lipid precursors of the cell wall. This interference weakens the bacterial cell wall, causing the microbes to leak and die. The drug is only effective against gram-positive bacteria, like Staphylococcus aureus and M. tuberculosis, and it could help combat resistant strains that commonly cause MRSA infections. Teixobactin was active against MRSA infections in mice. It is not effective on gram-negative bacteria, like E. coli.

The method they used to discover the antibiotic is also quite interesting. Compound Interest explains:

We know bacteria produce their own antibacterial compounds, to combat other competing bacteria. However, since 99% of bacteria can’t be grown in lab conditions, this greatly limits the number of these compounds that we can investigate. The method used to discover teixobactin overcomes this, by diluting soil samples, then placing small samples containing single bacterium cells in a device they named an ‘iChip’.

The ‘iChip’ is essentially just a device with a large number of small channels, into which bacteria can be deposited. The channels are then covered with a semi-permeable membrane, which allows environmental factors which influence bacterial cell growth to diffuse across to the bacterium cells. Using this method, the researchers were able to cultivate bacteria which were not previously grown in lab conditions, as once a culture is formed it is easier to entice them to do so. The researchers isolated 25 different antibiotic compounds, of which teixobactin is the most promising.

This is potentially a giant step forward for antibiotics and antibiotic discovery.  For further reading check out the original publication. Also check out coverage by Ed Yong, Science Magazine, and Scientific American.

getting rid of e. coli

E. coli filtering tool

A tube of human serum albumin and poly-arginine can be made just the right size to filter harmful E. coli from drinking water

E. coli bacteria are common and most are not harmful to humans. Some strains, however, can pose severe threats to human health. Every once in a while you hear of food recalls due to harmful strains of E. coli contaminating food or drinking supplies. This is especially a problem in developing nations, where food may be washed in contaminated water and cause food poisoning.

A group of Japanese researchers have developed a way to remove E. coli bacteria from water supplies using tubes made from human serum albumin and poly-arginine peptides. Scientific American describes the process:

The elegant method, devised by Teruyuki Komatsu and co-workers at Chuo University, Tokyo, begins by depositing microtubes made from alternating layers of human serum albumin (HSA) and poly-L-arginine onto a polycarbonate template. The template is then dissolved away to leave a hollow tube, which is just the right size to fit the E. coli bacterium. Key to removing E. coli from a solution is its strong binding affinity for HSA, which attracts the bacteria into the tube. So effective is this binding, that just 1.5μg of microtubes, added to a liter of contaminated water containing 100,000 bacteria were able to remove the bacteria with almost 100% efficiency. The final touch is the incorporation of a layer of magnetite (iron (II) oxide) nanoparticles into the microtubes to allow their easy removal from the solution using a magnetic field.

Read more about it here or here.

getting a caffeine fix

Coffee

People aren’t the only organisms that can’t get going without a daily cuppa. Scientists have engineered a strain of E. coli to thrive on caffeine. To engineer this characteristic in the bacteria, the scientists cloned in genetic material from Psuedomonas putida bacteria. This Psuedomonas species was already known to be able to metabolize caffeine. They also needed to clone in another gene from Janthinobacterium in order for the E. coli to completely metabolize the caffeine. After cloning the genetic material into E. coli, they saw that the bacteria’s growth rate was severely limited by the amount of caffeine in their environment and they could tell how much caffeine was present in a drink by how much of the bacteria grew. The scientists are hoping that the bacteria can be used in decaffeinating waterways near major cities, as the water around population centers usually contains lots of caffeine pollution. If you can get access, check out the paper at ACS Synthetic Biology.

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