Tag: DNA (page 1 of 3)

DNA transistors

Several media outlets have been reporting on the topic of DNA transistors, which use genetic material as a type of switch inside of a cell. NPR has a pretty good description of the project and a link to a YouTube video:

Transistors are simple on/off switches. Computers are made of many millions of these switches. And to program a cell, you need a biological version. As Endy reports this week in Science, he managed to make one out of DNA.

His switch, which he calls a “transcriptor,” is a piece of DNA that he can flip on and off, using chemicals called enzymes. Endy put several of these DNA switches inside his bacteria. He could use the switches to build logic circuits that program each cell’s behavior. For example, he could tell a cell to change color in the presence of both enzyme A and enzyme B. That’s a simple program: IF enzyme A AND enzyme B [are present] THEN turn green. For an in-depth look, check out Endy’s own explanation on YouTube.

There is also the following graphical explanation:

The enzymes turn on the switch and allow the transcription of a DNA sequence into RNA. This transcription will then lead to some observable cellular phenomenon. Note that both enzymes must be present in a cell for the switch to be turned on.

The research appears in Science.

DNA from HeLa cells is sequenced

HeLa cells

HeLa cells viewed under a light microscope

Nature magazine reports that a German lab has sequenced the DNA of HeLa cells. Like cells from most tumors, there are multiple copies of many genes. Excerpt:

Previous work showed that HeLa cells, like many tumors, have bizarre, error-filled genomes, with one or more extra copies of many chromosomes. To get a closer look at these alterations, a team led by Lars Steinmetz, a geneticist at the EuropeanMolecular Biology Laboratory in Heidelberg, Germany, sequenced the popular ‘Kyoto’ version of the cell line and compared the sequence with that of a reference human genome. The team’s results are published in G3.

Steinmetz’s team confirmed that HeLa cells contain one extra version of most chromosomes, with up to five copies of some. Many genes were duplicated even more extensively, with four, five or six copies sometimes present, instead of the usual two.  Furthermore, large segments of chromosome 11 and several other chromosomes were reshuffled like a deck of cards, drastically altering the arrangement of the genes.

Without the genome sequence of Lacks’ healthy cells or that of her original tumor, it is difficult to trace the origin of these alterations. Steinmetz points out that other cervical tumors have massive rearrangements on chromosome 11, so the changes in the HeLa cell may have contributed to Lacks’ tumor.

HeLa cells have been the subject of many biological studies as they are easy to culture and replicate very fast. The cells were originally isolated from an African American woman named Henrietta Lacks, and have been cultured for over 60 years. There is also a fascinating book about the origin of these cells called The Immortal Life of Henrietta Lacks.

strawberry dna

Strawberries

Strawberries

If you have kids and have some time to spare this weekend try this fun science experiment from Scientific American, extracting DNA from strawberries.

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